rs30701473 SNP Detail

Summary

• ID
  rs30701473
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:143909235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCAAGTTA TTTACTGCCA
  ATTAAGCAGC TTGTTTTGTC TTTGTCCTCT GTAAGGCGAG AGTGTGGGCT CTCCCAGGCT
  CCCAGCTATC TGCTCAAGAC ATTCAGCTGA TACCTCAGAA GGGAGAAGGC GAACTTTGTC
  TGTCCCTAGC CCAACTTCAC TGCTGCAAAG AACCGGGGTG AGGGAACGAA AGAAGGACTC
  Y
  GGTTCCTTAA ATAGGCCGAT TTTAAACACA TTTCCTCCGA AAGAGTCCCG GAACGTGTGT
  CCAGTGACCG CACAATAAAC CAGAATAAGA ACTGCACCAA TTAAGCTGTA ACAAAACCCT
  GAGACTCTGG AACCAGGACC GCTCTAAAAC CCATTAGCAT TGCATTTATC CGAATGCATC
  ATACCTTTAT GTAAATTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45456159	mCV23166731	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30701473					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143909235 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13894	CpG island 13894	813 bp distal
Cpgi13895	CpG island 13895	1076 bp proximal
Lmo4	LIM domain only 4	Intron
Rr406521	regulatory region 406521	within coordinates
Rr586599	regulatory region 586599	1468 bp distal
Rr586600	regulatory region 586600	588 bp distal
Rr586601	regulatory region 586601	413 bp proximal
Rr586602	regulatory region 586602	1736 bp proximal
Tssr35963	transcription start site region 35963	1521 bp upstream
Tssr35964	transcription start site region 35964	1505 bp upstream
Tssr35965	transcription start site region 35965	1129 bp upstream
Tssr35966	transcription start site region 35966	1107 bp upstream
Tssr35967	transcription start site region 35967	859 bp upstream
Tssr35968	transcription start site region 35968	1384 bp downstream
Tssr35969	transcription start site region 35969	1412 bp downstream
Tssr35970	transcription start site region 35970	1482 bp downstream
Tssr35971	transcription start site region 35971	1691 bp downstream