rs30700906 SNP Detail

Summary

• ID
  rs30700906
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132407431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATGAATGCAT TTTTGACATA CAAATCTAAT ATTACGTCAA TTTATAAAAG CACACTATGA
  AAAGTAGAAC GAGTCTTCTG TATTCAACTG TCTCAAAATT GGTTTAATGA AAACAGTCAC
  TGTAATCATT TGATTCCAAT TCCATGAGCA GTCTGTGTTG AAATACAGTG CAGCTGAGGA
  CCTCTAGTGT CACTGCTGAA TATGGCATTA ATTTGTAAAG ATACTGTAAA GGTGTTTGTG
  TGTGTATGTT TGTGTGTGTG TGTTTGTGTG TGTGTGTTTG TGTGTGTGTG TGTGTGTGTG
  W
  GAGAGAGAGA GAGAGAGAGA GCGCAAGAAT AAAAAGAAGA GCTAAAGTTA GCTTATAGAA
  CCAAATGAGA TGCTTAAATG AAGTTTTTTT CACTTAGAAT TTTTGAGCAT TTTAATTAAA
  ATATATTTAT ACATCACTTC CTACCTTTCC TTTCTTCCTT TCAGCCCCTA CCATACCCCC
  TACTATAAAA TTGATAGCCT CTTTAAAAAA TTATTATTGT TACATATAAA TATATGCACA
  ATATGTAAAT CCAACCTGCT GAGTGTACTC TTGTTATGTG TGCATATACG ATTTCAGGGC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45456700	mCV22641139	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30700906					SNP	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132407431 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr585446	regulatory region 585446			5 bp distal
Tbck	TBC1 domain containing kinase			Intron
				Noncoding-Transcript-Variant