rs30699984 SNP Detail

Summary

• ID
  rs30699984
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27284843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAATCAC CTCATGGGAT
  TCGTATACAT GCGCTGCCTG TGTGGTCTGC AGCGGTCAGG GACAGGCCTG GCAGCTAACT
  CACACACATG CCTTTATTCT AGAACATAGG TAAAGCCAGG GCCTCCTACT TAGGGCCGTC
  TAGGGCACTG TGCTGGCATC ATGCACTAAT TGTACAGTAT GTATCTGGTA AATCAAAGGC
  R
  TCATATCTAA TTTACATGGC TATATTTTTA TTTATATAAC CTAGGACCGT CTTGTTTTTA
  CATTCACCAA GTAGGGTATT TTTACCACAC TGCTGTTTAA CCTTTGGCCA GGATCATGGG
  ATGAAGGGAC AAGAGAGATT CACACCTTTT CAAAGGAACA CTCTGAGATA ATTTGTTAGT
  TGGGGTTTTT TAAAGGAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45456685	mCV22997018	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		A
ss60380255	NES15882815	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	A	G		G	A	A	A	A	A	A	A	A
ss134703062	ENSMUSSNP3151991	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30699984					SNP	A	A	G	G	A	A	G	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60380255	NES15882815	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27284843 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr574372	regulatory region 574372			1488 bp distal
Rr574373	regulatory region 574373			1592 bp distal
Rr574374	regulatory region 574374			1569 bp distal
Tssr28617	transcription start site region 28617			808 bp upstream
Tssr28618	transcription start site region 28618			843 bp upstream