rs30699220 SNP Detail

Summary

• ID
  rs30699220
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:144925745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTTCATT TTAGCTTACA
  GCTCCAGAGT AGATATGGTT CATCATGCAG CAGGCAAAGA AGACATGGCT ATCAAAGTGG
  GTAGCTGGAT GATCACATTC CATCCACACA CAGAAAGCAG AGAAACAGAA CAGGGAGTTG
  GACCACATTA TCAAACCTGA GAGCCAGTCT TTGATGACTA CTCTTAGCAA GGCTCTCTTA
  Y
  GGTTGTACAC TTTCCTAAGA CAGCACCACC TGGTGGGGAC CAAATGTTAT AACATATGAG
  CCTGTGGTGG ACACTTCACA TTCAGCCCAG AGCAATCTCC AGGTTTATCT TTCTTAAATG
  GACCAAGAGA AGATTGGGGT TCACTAGAGA GAGAAAGTAT TTGTGGATTT ATAAGGAATA
  AATAAAACAG TATTAGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45455671	mCV23564120	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss136035837	ENSMUSSNP4353861	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss321007367	CHEV_3_144882948	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30699220					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144925745 () rs orientation: forward

Symbol	Name	Function Class
Rr586766	regulatory region 586766	20 bp proximal