rs30698568 SNP Detail

Summary

• ID
  rs30698568
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141687982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG GTCTGTGTCA CTGAACACCG
  Y
  GGTAATACTC CGGCGAGGTT CTCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45455920	mCV23581133	ABI	CRAMUS_MOUSE	f	SNP	T	T						T		C
ss61089558	NES16605973	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	C	C	T		C	T	C	C		C
ss136009117	ENSMUSSNP5813521	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
ss320997337	CHEV_3_141645185	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30698568					SNP	T	T	?	T	T	T	T	T	T	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61089558	NES16605973	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141687982 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bmpr1b	bone morphogenetic protein receptor, type 1B			Intron
				mRNA-UTR
Rr586376	regulatory region 586376			206 bp distal
Rr586377	regulatory region 586377			within coordinates
Rr586378	regulatory region 586378			33 bp proximal
Tssr35923	transcription start site region 35923			within coordinates
Tssr35924	transcription start site region 35924			3 bp downstream