rs30698565 SNP Detail

Summary

• ID
  rs30698565
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:125100295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCAAGCCA TGGAGAACAA
  ACCTGTAAAA CCTGTAAGTA ACATTTCTCT ATGACATCTG CATCAGATCC TGCCTCCAGG
  TTGCTACCTT AAATTCTTGA TCAGTGATTG AGTTTAAGGT AAAATAAACC CTTAATTTCC
  AAATTATAAT ATATAGTATA TATTATATAT AATATTAAAT ATATATTATC ATAGCTGTAG
  W
  AATCCTAAGA CAAATGGATT TATACAATAA TTTTGGCCAG ATTCATCAAC ATAAAGGCAT
  TTGCCACCAA GTCTGTCAAC ACAACTGTGG CAGTTTGAAT AAGTATGGCC CCCATAAACT
  CATGTATTTC AATTCTTGAC CCATAGGGAG TGGCAGTACT AGGAGGTGTG GCTTTGTTGG
  AGTAGGTGTA GTCTTGTTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45455917	mCV24036433	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	A
ss135806131	ENSMUSSNP5061679	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		A
ss320935449	CHEV_3_125009564	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30698565					SNP	A	T	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125100295 () rs orientation: forward

Symbol	Name	Function Class
Rr584607	regulatory region 584607	95 bp proximal