rs30698333 SNP Detail

Summary

• ID
  rs30698333
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:132064979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAGAATA AATAAATATA
  TTTTAAAAGA AAATGATAAA TCACATAATA GAAAAATAGT TTGATGCCAT TCTAAACTAA
  GACATTTTAC TCCCCGCCCC CCCCCCAAAA AAAACCCAAA GAATAAAAGA ACAATAAGAA
  ATTAAGAACA AATTAAAAGT GAGCAGAAGA TTTGAGTGGA CACTTTGAAA ATTAAAATAT
  R
  TACATTACAG CCCAACTCAC CAGCGAAATG AGAGTTAAAG CAAAAATACT AGGGGTGAGA
  GAGATGATCC AGCTGTTAAG AGAACATACT ATTCTTCCAG AGGACCCAAG TTCAGTTCCT
  AGCACCCATG TCAAGCAGCT CACAGATGCC TGTAACTCCA GCTCCTGAGG TTCTAAAGTC
  CTCTTCTAGC TTTTGTGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46975109	NES10876766	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30698333					SNP	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46975109	NES10876766	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132064979 () rs orientation: forward

Symbol	Name	Function Class
Rr585424	regulatory region 585424	531 bp proximal