rs30696169 SNP Detail

Summary

• ID
  rs30696169
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153429959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGCTACG ACACACAAGA
  CTGTTCTGTG TGGCCCTTGG TCACACAGCA CCTTCTCGGG GCTGGAAACC GAACACCTTA
  GTTTTCTCTC CGGGATGGGA AACCTTCATG CTGCTCAAGT TTGGATCCAC GGAGTCAGAC
  TGGGCAACTG AATAAGGACA GCGAGGAAAA ACCAGAACAG GCTAGGGAGT GAACTTTCTC
  R
  GTGAGTTGGA AACAAGTCTT CCCAGAAAAG GTCCTCACCA AGTAGGTCCA CGCAAAGCCT
  TCAAGCCTGT GGCTAAGGAG TCACTAAGAA CATGGAATGT ACCAAGGCTT GAAAGAACTC
  AGCAAAATAG GGCTGGACTC TGGGTAGATA CTGTCTGTTC ACATGTGAGC CTAAGGAAGT
  CCAACATTCT ACCTATGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45454948	mCV23571368	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss136111701	ENSMUSSNP2642845	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30696169					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153429959 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587739	regulatory region 587739			410 bp distal
Rr587740	regulatory region 587740			within coordinates
Rr587741	regulatory region 587741			842 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr32435	transcription start site region 32435			409 bp downstream
Tssr36240	transcription start site region 36240			782 bp downstream