rs30696119 SNP Detail

Summary

• ID
  rs30696119
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108449275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGTTAGGG AGAAAAAAAA AAAAAAAAAC CACTTTCACT
  ACTGTCTGAG AACCACTAGT CTAGAAGGGA GTATAAAGAG AAGGAGAGAA AAATAAACCT
  R
  CCAAGTCCCG CTGAGTACTG AATATGAACC AGGTGTACGT TAGCCATCTT TCTGTTGCAG
  TAATAAATAC CTGAGGTATA TAAACCAAGG ACCAGGGAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45954131	mCV24650742	ABI	CRAMUS_MOUSE	f	SNP		G	A					G		A
ss51813749	NES14768608	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A		A	A	G	G		A	G	A	A		G
ss133503059	ENSMUSSNP4377619	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
ss321892768	CHEV_6_108422308	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30696119					SNP	G	G	A	A	A	G	A	G	A	A	G	G	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51813749	NES14768608	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108449275 () rs orientation: forward

Symbol	Name	Function Class
Gm35165	predicted gene, 35165	within coordinates
Gm44101	predicted gene, 44101	within coordinates
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636115	regulatory region 636115	99 bp distal
Rr636116	regulatory region 636116	218 bp proximal
Rr636117	regulatory region 636117	501 bp proximal
Tssr58061	transcription start site region 58061	719 bp upstream
Tssr58062	transcription start site region 58062	753 bp upstream
Tssr58063	transcription start site region 58063	770 bp upstream
Tssr58064	transcription start site region 58064	801 bp upstream
Tssr62385	transcription start site region 62385	650 bp upstream
Tssr62386	transcription start site region 62386	222 bp downstream