rs30692172 SNP Detail

Summary

• ID
  rs30692172
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:19800281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAAG AAGTTTTAGT ATTTGGCCCC
  W
  TGGGTCTTTA AGAATTACAT AGCTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49161609	NES12476684	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	T	T	A	A	T	T	T	A	T	A	T
ss139192898	ENSMUSSNP6850772	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30692172					SNP	T	A	A	A	T	T	A	A	T	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49161609	NES12476684	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:19800281 () rs orientation: forward

Symbol	Name	Function Class
Gm62728	predicted gene, 62728	326 bp downstream
Nid2	nidogen 2	1052 bp upstream
Rr389324	regulatory region 389324	within coordinates
Rr488149	regulatory region 488149	within coordinates
Rr488150	regulatory region 488150	78 bp distal
Rr488151	regulatory region 488151	923 bp proximal
Tssr124369	transcription start site region 124369	690 bp upstream
Tssr124370	transcription start site region 124370	724 bp upstream
Tssr124371	transcription start site region 124371	748 bp upstream
Tssr124372	transcription start site region 124372	1063 bp upstream
Tssr127556	transcription start site region 127556	911 bp downstream