rs30692171 SNP Detail

Summary

• ID
  rs30692171
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:19800370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTT TAAGTTTTTT TTTAAACTAC
  Y
  TTTGCTTCTA AGGAGCCTGT GGGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss49161608	NES12476686	PERLEGEN	MM_PANEL2	f	SNP		C	C	T	C	C		T	C	C
ss139192901	ENSMUSSNP6418454	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C					T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs30692171					SNP	C	C	C	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49161608	NES12476686	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:19800370 () rs orientation: forward

Symbol	Name	Function Class
Gm62728	predicted gene, 62728	237 bp downstream
Nid2	nidogen 2	963 bp upstream
Rr389324	regulatory region 389324	within coordinates
Rr488149	regulatory region 488149	within coordinates
Rr488150	regulatory region 488150	167 bp distal
Rr488151	regulatory region 488151	834 bp proximal
Tssr124369	transcription start site region 124369	601 bp upstream
Tssr124370	transcription start site region 124370	635 bp upstream
Tssr124371	transcription start site region 124371	659 bp upstream
Tssr124372	transcription start site region 124372	974 bp upstream
Tssr127556	transcription start site region 127556	822 bp downstream