rs30692169 SNP Detail

Summary

• ID
  rs30692169
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:19800949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTGGGGA GGACATTTCA
  GAGGGTGGCA GTGTCCTTAC AAAGGTTAGC CAGCGCTTGG GGATAGAATT TAGGAGTCAG
  CCTTTCACAA AGGCATGCTT CTCAGCAGGA AATTTGGGTG GGGCGGAGCA GCCCCCGGAT
  GGAGACAAAG CTCCTTTGAT TCTTTATCCG AGGGCCAGGC CTCTAGCGAG AGGGGTACCC
  S
  GGACCCTAGG GCAGGGCGCG AACTCCAGTG TGTTCATTAC CCTCCCTCGC TCTGCCAACC
  CAGTGCGCAC AGTCGCTCCT GCCCAGAGCT GCACGCGCGC CGAGGGTCCT GCCAGCCCTT
  GAGGTCACCT CCTGCAGCGT CGTAGCCTAC ACTGGAGAGT TGGGGGTAGC CCAGGAGTAG
  TTGGGACAGC CTAGACCAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	PWD/PhJ
ss49161606	NES12476692	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	PWD/PhJ
rs30692169					SNP	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49161606	NES12476692	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:19800949 () rs orientation: forward

Symbol	Name	Function Class
Gm62728	predicted gene, 62728	within coordinates
Nid2	nidogen 2	384 bp upstream
Rr389324	regulatory region 389324	within coordinates
Rr488149	regulatory region 488149	within coordinates
Rr488150	regulatory region 488150	746 bp distal
Rr488151	regulatory region 488151	255 bp proximal
Tssr124369	transcription start site region 124369	22 bp upstream
Tssr124370	transcription start site region 124370	56 bp upstream
Tssr124371	transcription start site region 124371	80 bp upstream
Tssr124372	transcription start site region 124372	395 bp upstream
Tssr127556	transcription start site region 127556	243 bp downstream