rs30692165 SNP Detail

Summary

• ID
  rs30692165
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:19801812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCAGTTC AGCAGCCTCT
  ACGTAAGTTC AGCTCCCGGA GGTGCGCGGT TGGGTGTGGG ACTCTTAGCT TCTTCCCAGG
  GAGTGGAACA ACCTCCATGT TTAACTGTCG TCCCCTCTGG GGACCAGGCT TAGCAGCGGC
  GCTGCAACTT CTTGATCCTT ACTGTGGAGG AATAAGGATC GTTTCAAGGG CGAGCTGGAA
  M
  CGTGCCCCTC TACTTTGACA TTCTAGGCAG GAAGATGAAG TTAAGGCTGC GAGTGGGGTT
  TGCGTTTAGG GCGGTGGGGG GGGGGGGACT GTGCACGCCG GCAGAGCTAT CTTAAGGGCG
  AGCAATACTG GAGAAAGATG GACCGGTTCG AGAGCAGCCG CACCTGTGGG TCGCAGTGCA
  CTGGAGGGTG AGATAGGAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49161598	NES12476706	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30692165					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49161598	NES12476706	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:19801812 () rs orientation: forward

Symbol	Name	Function Class
Gm62728	predicted gene, 62728	598 bp upstream
Nid2	nidogen 2	Intron
Rr389324	regulatory region 389324	within coordinates
Rr488149	regulatory region 488149	609 bp distal
Rr488150	regulatory region 488150	1609 bp distal
Rr488151	regulatory region 488151	469 bp distal
Tssr124369	transcription start site region 124369	819 bp downstream
Tssr124370	transcription start site region 124370	790 bp downstream
Tssr124371	transcription start site region 124371	776 bp downstream
Tssr124372	transcription start site region 124372	452 bp downstream
Tssr127556	transcription start site region 127556	598 bp upstream