rs30691433 SNP Detail

Summary

• ID
  rs30691433
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:19802005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCACGCCGGC AGAGCTATCT TAAGGGCGAG CAATACTGGA
  GAAAGATGGA CCGGTTCGAG AGCAGCCGCA CCTGTGGGTC GCAGTGCACT GGAGGGTGAG
  R
  TAGGAGCTTG CTACCCTGGA TGTGGCTCAA CCTTGATTGG AGTAGAAATA TTTTCTACAA
  TAGGTGGACG GTAGGTGCGT ACGACTGGAG CACGGTGGCT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	PWD/PhJ
ss49161596	NES12476710	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	PWD/PhJ
rs30691433					SNP	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49161596	NES12476710	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:19802005 () rs orientation: forward

Symbol	Name	Function Class
Gm62728	predicted gene, 62728	791 bp upstream
Nid2	nidogen 2	Intron
Rr389324	regulatory region 389324	within coordinates
Rr488149	regulatory region 488149	802 bp distal
Rr488150	regulatory region 488150	1802 bp distal
Rr488151	regulatory region 488151	662 bp distal
Tssr124369	transcription start site region 124369	1012 bp downstream
Tssr124370	transcription start site region 124370	983 bp downstream
Tssr124371	transcription start site region 124371	969 bp downstream
Tssr124372	transcription start site region 124372	645 bp downstream
Tssr127556	transcription start site region 127556	791 bp upstream