rs30691431 SNP Detail

Summary

• ID
  rs30691431
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:19802128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGC CCTTGGGCTT GAGCGACCAC
  Y
  ACTATTTTGA CCTTTTAAAA ATATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss49161594	NES12476714	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T	C	C	T	T		C	T	C		T
ss139192949	ENSMUSSNP2442630	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss324564004	CHEV_14_20571282	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30691431					SNP	T	C	C	C	T	T	C	C	T	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49161594	NES12476714	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:19802128 () rs orientation: forward

Symbol	Name	Function Class
Gm62728	predicted gene, 62728	914 bp upstream
Nid2	nidogen 2	Intron
Rr389324	regulatory region 389324	11 bp downstream
Rr488149	regulatory region 488149	925 bp distal
Rr488150	regulatory region 488150	1925 bp distal
Rr488151	regulatory region 488151	785 bp distal
Tssr124369	transcription start site region 124369	1135 bp downstream
Tssr124370	transcription start site region 124370	1106 bp downstream
Tssr124371	transcription start site region 124371	1092 bp downstream
Tssr124372	transcription start site region 124372	768 bp downstream
Tssr127556	transcription start site region 127556	914 bp upstream