rs30691428 SNP Detail

Summary

• ID
  rs30691428
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:19802467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCTGCTG AACTGTCTCA
  CCGCCCCTTG GTCTTATTGT AGGTGGGCAC CAACGGCATC ATCTCCACCC AGGACTTCCC
  CAGGGAGACT CAATATGTAG ATGATGATTT TCCTACTGAC TTCCCAGCCA TCGCCCCTTT
  CCTGGCTGAC ATCGACACTA GTCACAGCAG GGGCCGGATC CTGTACCGCG AGGACACCTC
  Y
  GGAGCTGTGC TGAGCCTGGC TGCCCGCTAC GTGCGCACTG GCTTCCCGCT GTCGGGGTCC
  AGCTTCACCC CCACCCACGC CTTCCTGGCC ACCTGGGAGC ACGTGGGCGC CTACGAGGAG
  GTCAGTCGCG GGGCTGCGCC GTCAGGAGAG GTAAGTGAGG GATACCCTGC AGCTGAATAA
  ATTAAAGGGA CGGCCTGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49161591	NES12476579	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30691428					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49161591	NES12476579	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:19802467 () rs orientation: forward

Symbol	Name	Function Class
Gm62268	predicted gene, 62268	1994 bp downstream
Gm62728	predicted gene, 62728	1253 bp upstream
Nid2	nidogen 2	Coding-Synonymous
Rr389324	regulatory region 389324	350 bp downstream
Rr488149	regulatory region 488149	1264 bp distal
Rr488151	regulatory region 488151	1124 bp distal
Tssr124369	transcription start site region 124369	1474 bp downstream
Tssr124370	transcription start site region 124370	1445 bp downstream
Tssr124371	transcription start site region 124371	1431 bp downstream
Tssr124372	transcription start site region 124372	1107 bp downstream
Tssr127556	transcription start site region 127556	1253 bp upstream