rs30690492 SNP Detail

Summary

• ID
  rs30690492
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:19802813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGGTAAG TGAGGGATAC
  CCTGCAGCTG AATAAATTAA AGGGACGGCC TGAATTTTGT GTTGGATCTA AGGCTTTGAC
  TAGGAGTTTC TTCCCTTGAT CAGGCGTTGA ACTGGATGAA ACCAGTGCTT AGGCAGCTTG
  TGAGTGAAGT CTATTTATTG TCTCTGGGGG CATTCTAAGG CTCTCCTAAG TGGCTAAGTC
  R
  GCTTAGTGAA ATGAGGGACT AAGGCTCAGA TACCAAGAAC CACCTATAAG TACACAAATA
  TTTCTAATGA TAGGTTCATT GAAGGGAAAA AATGGAAAAT TGAGGAAGTT TTCAAAAGGA
  ACAACCTCTT ATTTTCCTAC CACTGTTAAT TAATTAATTA ATTAATTAAT TTTTTTGGTA
  TGAGTTGGGC GTGGCAGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49161585	NES12476587	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30690492					SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49161585	NES12476587	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:19802813 () rs orientation: forward

Symbol	Name	Function Class
Gm62268	predicted gene, 62268	1648 bp downstream
Gm62728	predicted gene, 62728	1599 bp upstream
Nid2	nidogen 2	Intron
Rr389324	regulatory region 389324	696 bp downstream
Rr488149	regulatory region 488149	1610 bp distal
Rr488151	regulatory region 488151	1470 bp distal
Tssr124369	transcription start site region 124369	1820 bp downstream
Tssr124370	transcription start site region 124370	1791 bp downstream
Tssr124371	transcription start site region 124371	1777 bp downstream
Tssr124372	transcription start site region 124372	1453 bp downstream
Tssr127556	transcription start site region 127556	1599 bp upstream