rs30689524 SNP Detail

Summary

• ID
  rs30689524
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:71762830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATGAATG CTATTGCCCC
  GGAAGGCCGG AGGTGTAGGG CTCCCCTGGA GGTTGCGAGC CATTTGATGT GCATGCTGGG
  AAATGGACTT AGGTCCACTG CACTGGCACT CTGTGCTACT TAACTGTTGA GTTCTGCCCC
  TAGGTTTCTA GTGTCTTGAG CCAAGAGGTT GTGCCTTCTT TCTCTTCGTT TCTGTGTTAG
  R
  AAATAACCAG AAGGGGAAGG AGAGATGGCT CAGCTGTTCA AAGCACTGGC TACTCTTCCA
  GAGGACCCAG GTTCAATTCC TAGCACCCAT GTAGCAACTC ACAACCATCC ATAACTCCCA
  GGAGATCTGG CATCCTCTTC TGTCTCTGCG GGTCCTGCAG GCACAGCACA AACATGATAC
  ACAGACATAC ATTCAGACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss47972998	NES11913680	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs30689524					SNP	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47972998	NES11913680	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71762830 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Reep1	receptor accessory protein 1			Intron
				Noncoding-Transcript-Variant
Rr632004	regulatory region 632004			1825 bp distal
Rr632005	regulatory region 632005			955 bp proximal