rs30688942 SNP Detail

Summary

• ID
  rs30688942
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71789302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACAAGGC AGGCCTGGAA
  CATATGAGAC TCCATCTCAA AAATACAAAA CCAAAGTAAA AATTCTAAGT ATAAATGAGT
  TAAAGATTTT AAACGTGGGA GGTAACAAGG ATTAGAAACC AAATGCTTAT ACTCTCTGGC
  CTGGAAACTT GGCCCATGTC TACTACATAG GATGGCCCGG AAGAAAAACA TCACTGATAC
  M
  TGTCTCACAG ACTCAGCTGA CGAGACAAAT ATTAACCTCA AAGTCTCACT ATTTTACTGT
  TTTAGAGGTC AGTGGAAACT GGGAGCCTGT GAAGATATGA GCAGTTCACT GGTGGGCAGT
  TTTATTTGTA TGGGCAGAAC TGGGTAGCAG TTTTCTTCCT GAGTTTTTCT TCACTTGCAG
  ATGGGGGATT GCCTATGCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47973364	NES11912050	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A	A	C	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30688942					SNP	A	A	C	A	A	A	C	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47973364	NES11912050	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71789302 () rs orientation: forward

Symbol	Name	Function Class
Mrpl35	mitochondrial ribosomal protein L35	679 bp downstream
Reep1	receptor accessory protein 1	1608 bp downstream
Rr632010	regulatory region 632010	660 bp proximal