rs30688662 SNP Detail

Summary

• ID
  rs30688662
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:71761877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGCCATT TTCTCCGAGA
  CTCTGTTCCT ATAAGTGTCT TGGTGGCTTT GCTGGCTTCA GGATTCCTCA CAGGAGGAAG
  ACAATCCCAA CTCTTTTAAA GACTAGAATT GGTAATTTCT CTTTTTCAAA AACAATACTC
  TTGAAGTTCT TGTCCAGAAG AGCCCATCCT CACATTCAAG AGGGCCCCCG TGAGAAAGAA
  M
  TGAGCAAAAG TTCTGCCACC ACTCGGACCC CTGCCACCTC AGTGCCTTTG AAACCTGGCT
  CCTACACGAG GCCCTGTCCC TTCTTAGGCT GGCTAAGCCA ACTTTTCTTT TAACTCATTG
  CTTAACTTGA AAAGTGCATG CCTTTCATCC CAGCACTCAG AAGATAGAGG CAGGTGGATC
  CCTGAGTTCA AGGTTAACCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47972996	NES11913765	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30688662					SNP	A	A	A	A	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47972996	NES11913765	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71761877 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Reep1	receptor accessory protein 1			Intron
				Noncoding-Transcript-Variant
Rr632004	regulatory region 632004			872 bp distal
Rr632005	regulatory region 632005			1908 bp proximal