rs30688660 SNP Detail

Summary

• ID
  rs30688660
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:71761845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAACTTT CTTCCCAGGG
  AGTTTACCCC GTCCAAGCCA TTTTCTCCGA GACTCTGTTC CTATAAGTGT CTTGGTGGCT
  TTGCTGGCTT CAGGATTCCT CACAGGAGGA AGACAATCCC AACTCTTTTA AAGACTAGAA
  TTGGTAATTT CTCTTTTTCA AAAACAATAC TCTTGAAGTT CTTGTCCAGA AGAGCCCATC
  Y
  TCACATTCAA GAGGGCCCCC GTGAGAAAGA AATGAGCAAA AGTTCTGCCA CCACTCGGAC
  CCCTGCCACC TCAGTGCCTT TGAAACCTGG CTCCTACACG AGGCCCTGTC CCTTCTTAGG
  CTGGCTAAGC CAACTTTTCT TTTAACTCAT TGCTTAACTT GAAAAGTGCA TGCCTTTCAT
  CCCAGCACTC AGAAGATAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
ss47972994	NES11913764	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
rs30688660					SNP	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47972994	NES11913764	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71761845 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Reep1	receptor accessory protein 1			Intron
				Noncoding-Transcript-Variant
Rr632004	regulatory region 632004			840 bp distal
Rr632005	regulatory region 632005			1940 bp proximal