rs30687943 SNP Detail

Summary

• ID
  rs30687943
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71788270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTGAAG ACAGGGTTTC
  TCTGTAGAGT TCTGGCTATC CTGGAACTTG CTTTGTAGAC CAGGCTGGCC TCGAACTCAG
  AGATCCCTCT GCCTCTGCTT CCTGAATGCT GGAATTAAAG GCGTGCACAA CCCTACCCAA
  TGAAGTACAA CTTCTTATAT ATAGTTTAAG GAGGAGGAAG AGTCAGCAGA AAGCCCATAC
  W
  GTGACATCAA GTCATCAGGA AGCTGATCAA GCAATGTTGT ACAAGGGTAA CACAGGGTAT
  CTCAAGTGCA TCACAGACAC AGCACACATC AGTTTTGAGA CTGATAACTT GTCTTTTTAA
  GGGAAAAAGC AAAGTTCCCA GGAACCAAAT CCTTAACTCC TTCGAGGCCT TGACCCTAGC
  TCTAGACCAG ACCAAGTCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47973354	NES11912101	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	A	A	A	T	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30687943					SNP	A	A	T	A	A	A	A	T	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47973354	NES11912101	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71788270 () rs orientation: forward

Symbol	Name	Function Class
Mrpl35	mitochondrial ribosomal protein L35	1711 bp downstream
Reep1	receptor accessory protein 1	576 bp downstream
Rr632010	regulatory region 632010	1692 bp proximal
Tssr57043	transcription start site region 57043	1852 bp downstream