rs30687941 SNP Detail

Summary

• ID
  rs30687941
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71787965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCCTTTA ATCCCAGCAC
  TTGGGAGGCA GAGGCAGGCA GATCTCTGAG TTCAAGGTCA GCTCACAGAG TGAGCTCTAG
  GACAGCCAGG GCTACACAGA GAAACCCTAT CTAGAAAAAA AAATTATTAT TTTGGTAGTT
  TTTAAACAAT TAAATAATTA TTGACCTAGA TCAGTAAGTC ATTCCTCAAT GGTCCTAAGG
  R
  GGACTACCAG GAGATGAAAA GATATATGAG ATAGGAAAGC TGTGTCTTAT TCCAGACAAG
  TTTGTCAAGA AGTACAGCAT CTTTTTTTTA ATTTTGTTTT GTTTTGTTTT GAAGACAGGG
  TTTCTCTGTA GAGTTCTGGC TATCCTGGAA CTTGCTTTGT AGACCAGGCT GGCCTCGAAC
  TCAGAGATCC CTCTGCCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47973352	NES11912173	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A	G	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30687941					SNP	A	A	G	A	A	A	A	G	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47973352	NES11912173	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71787965 () rs orientation: forward

Symbol	Name	Function Class
Reep1	receptor accessory protein 1	271 bp downstream
Rr632010	regulatory region 632010	1997 bp proximal
Tssr57043	transcription start site region 57043	1547 bp downstream