rs30687878 SNP Detail

Summary

• ID
  rs30687878
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:154739894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATCAGCT TCCACAAAGA
  CATGGCATGT AGGTAGGTGG ATCATGATTT CCTGTGTATT GCATGCGAGG CAGGTTTGGG
  GCTAAATTGG ATGGTCTAAT TCAGTGTTCT GTTCATTTGA GTTCCCCGGT GACCTCTTCT
  GAACCGTATT AAGGCTCAGT GTTTCCCCTC CAACATCTGC ATATCATTTT AGAAGCATAC
  Y
  GTATTGAAAT ATGAAGACTG GATAGGGCAG AACTCTAGAG AGGATTCGGG GAGCGAGCTT
  CAGTTCCCTT TTAGAGTTTT GCACACAGAG ACTCCGGATT CAGCTAACTG AGCCAACGTA
  ATGCATTTAA ACAAACAAAC AGACAAACAA ACAAAACGAC CAAGTTTCAA GGAATCCAAG
  CTTACAAAAT GACAAAGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47473789	NES10314519	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30687878					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47473789	NES10314519	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154739894 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587914	regulatory region 587914			259 bp proximal
Tnni3k	TNNI3 interacting kinase			Intron
				Noncoding-Transcript-Variant