rs30685049 SNP Detail

Summary

• ID
  rs30685049
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:154741414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGAGAAAA AGAACTAAAA
  ATATGCTAGC AGGAAAATTA GGAAAACAGA GATATGTGGG AACGGGGTGA AGCAGTGCTC
  TTCTAACTGT TGCCTGAAAA TACCTGCGTG GGGTTCGAAA AAAGTGCACA TTTGCCTGTT
  CTGGCTAAAT GTATACTTTC ATCTGATCCA GCTCATTGGA GGCAGGTGTT AATCAGCTGA
  Y
  GTGGTCTCCT GGTAAGCACG TGGATTTTAC CAGAGCTTTG TGGTTAAATG GCACTGGTGA
  CTTTGCCTGC TTTTACATCC GTCAAGGACC AGGGTTTCTC TGGATGCTGT GAAGAGAGGC
  TTGTCTACTT TGTTTCCTAA GCACCTACCT TTCAACTGTT TTGAAGTAGT TGGCAGTCAG
  TGCCCTTTCC ACAGCAGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47473759	NES10314533	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30685049					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47473759	NES10314533	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154741414 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587914	regulatory region 587914			1240 bp distal
Tnni3k	TNNI3 interacting kinase			Intron
				Noncoding-Transcript-Variant