rs30684838 SNP Detail

Summary

• ID
  rs30684838
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:19799317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCCACCAT AGGGAAGGGG
  ACTAGTGTGT GAGCTATTCT GCGTCATGAA ATATAGGAGG TGCCATTTGA GAGCCGATGG
  CACAGCCAGA GATGAATCAA GAGAAGTAAC CTAAGTTACT TTGCAAAGTG AAAATGCCAT
  TGAATCAGTA AAATCTTCGG TTGAGGGTAG AAGTTTAGAG ATTAGACAAA ACTGGGTTTA
  W
  AGAAAAGCTC TGATGCACAC CAGTCATGTG GCAATAATCA CTTAAAACAA CAAACAAACA
  AACAAACAAA CCACTGCCCA AGCTTAGTCT CCTTAGCACA GTGTCCTGCT GATTTGCTTG
  TCTATTACAT CCAGCAACTC CTCTCAAATC AAATGTCTTA AGACAACAGA TATTTAGTAA
  TTCTCGGGGT AATTAATTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49161614	NES12476896	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30684838					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49161614	NES12476896	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:19799317 () rs orientation: forward

Symbol	Name	Function Class
Gm62728	predicted gene, 62728	1290 bp downstream
Rr389324	regulatory region 389324	within coordinates
Rr488149	regulatory region 488149	838 bp proximal
Rr488150	regulatory region 488150	865 bp proximal
Rr488151	regulatory region 488151	1887 bp proximal
Tssr124369	transcription start site region 124369	1654 bp upstream
Tssr124370	transcription start site region 124370	1688 bp upstream
Tssr124371	transcription start site region 124371	1712 bp upstream
Tssr127556	transcription start site region 127556	1875 bp downstream