rs30684836 SNP Detail

Summary

• ID
  rs30684836
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:19800057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGG TGACCTTGAA CAAGTCAAAT
  M
  ATCTCACATC TTTGAGACAC CATTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49161612	NES12476680	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	C	C	A	A	C	C	C		A	C	C	A		C
ss139192892	ENSMUSSNP5848511	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						C
ss324563991	CHEV_14_20569211	CHEVERUD	SCREENING_POP	f	SNP												A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30684836					SNP	C	A	A	A	C	C	A	A	C	C	C	A	A	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49161612	NES12476680	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:19800057 () rs orientation: forward

Symbol	Name	Function Class
Gm62728	predicted gene, 62728	550 bp downstream
Nid2	nidogen 2	1276 bp upstream
Rr389324	regulatory region 389324	within coordinates
Rr488149	regulatory region 488149	98 bp proximal
Rr488150	regulatory region 488150	125 bp proximal
Rr488151	regulatory region 488151	1147 bp proximal
Tssr124369	transcription start site region 124369	914 bp upstream
Tssr124370	transcription start site region 124370	948 bp upstream
Tssr124371	transcription start site region 124371	972 bp upstream
Tssr124372	transcription start site region 124372	1287 bp upstream
Tssr127556	transcription start site region 127556	1135 bp downstream