rs30684346 SNP Detail

Summary

• ID
  rs30684346
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:154799963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATTCTGC ATAGCAGCTC
  CCTATGAACT TTTAAGTTTC TGAGTAAGCT TAGTTTTTCA CTTAAAGCCT TGACCTCAGC
  ATTTAATTCT GTATTTAAAG TGGACACATT TGTGGGGAGG AGATAACTGT TTCACAATAC
  ACTCCGGCTG AAGGAAATTA AGAAAATACA GAAAGGCCCG ATAGATAATA ACAGCAATAG
  M
  AGTCAGAGCT TGTAATTTAT AGTCTTGAGT GAACTGGAGT CATCCCAGGT TTTTGGTGAC
  CTGCCTTATG TTTAAAGGGC ACAGACACAC TGAAGTATGT TGGTGGGTAT GGCAAGAATA
  TAAGCAGAGC TTTATTTGGA GTCTACTAAA GTAACACAAA CAGGAAAGAT TTGGTGGAAA
  TTTAAAAGAT AATAATGGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47473177	NES10312246	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30684346					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47473177	NES10312246	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154799963 () rs orientation: forward

Symbol	Name	Function Class
Fpgt	fucose-1-phosphate guanylyltransferase	939 bp upstream
Gm37482	predicted gene, 37482	539 bp upstream
Lrriq3	leucine-rich repeats and IQ motif containing 3	Intron
Rr398138	regulatory region 398138	776 bp downstream
Rr587919	regulatory region 587919	934 bp distal
Rr587920	regulatory region 587920	728 bp distal
Rr587921	regulatory region 587921	182 bp distal
Tssr32470	transcription start site region 32470	851 bp downstream
Tssr32471	transcription start site region 32471	782 bp downstream
Tssr32472	transcription start site region 32472	753 bp downstream
Tssr32473	transcription start site region 32473	729 bp downstream
Tssr36282	transcription start site region 36282	1086 bp upstream
Tssr36283	transcription start site region 36283	941 bp upstream