rs30677529 SNP Detail

Summary

• ID
  rs30677529
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95042668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTAG CCATGCGGGG GTGGGGTAGG
  R
  GTGGGGGTGG GGATGTAGAG ACTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss45454480	mCV24559820	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss135510092	ENSMUSSNP6594123	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss320841143	CHEV_3_94939279	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs30677529					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95042668 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13498	CpG island 13498	1302 bp distal
D3Umi10	DNA segment, Chr 3, University of Michigan 10	1118 bp distal
Lysmd1	LysM, putative peptidoglycan-binding, domain containing 1	Intron
Rr367480	regulatory region 367480	1268 bp downstream
Rr580823	regulatory region 580823	1259 bp distal
Rr580824	regulatory region 580824	within coordinates
Rr580825	regulatory region 580825	393 bp proximal
Rr580826	regulatory region 580826	992 bp proximal
Scnm1	sodium channel modifier 1	1383 bp upstream
Tssr34419	transcription start site region 34419	1444 bp upstream
Tssr34420	transcription start site region 34420	1369 bp upstream
Tssr34421	transcription start site region 34421	1340 bp upstream