rs30676719 SNP Detail

Summary

• ID
  rs30676719
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88739942 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGTGA ATGGGCGGAG ACTCATCCTC
  R
  GAAAAACTCG GCAGTGGGCG GGGTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46432259	mCV22843935	ABI	CRAMUS_MOUSE	f	SNP		G	A					G
ss46745786	NES10754920	PERLEGEN	MM_PANEL2	r	SNP	C		T	T	T	T	T		C	T	T	C	C	T	C	C
ss135472289	ENSMUSSNP4432629	ENSEMBL	ENSEMBL_Sanger	r	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30676719					SNP	G	G	A	A	A	A	A	G	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46745786	NES10754920	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88739942 () rs orientation: reverse

Symbol	Name	Function Class
1500004A13Rik	RIKEN cDNA 1500004A13 gene	88 bp upstream
Gm64348	predicted gene, 64348	within coordinates
Rr375322	regulatory region 375322	543 bp downstream
Rr397779	regulatory region 397779	within coordinates
Rr579901	regulatory region 579901	1188 bp distal
Rr579902	regulatory region 579902	160 bp distal
Rr579903	regulatory region 579903	1041 bp distal
Rr579904	regulatory region 579904	within coordinates
Rr579905	regulatory region 579905	1941 bp proximal
Tssr34067	transcription start site region 34067	64 bp upstream