rs30676592 SNP Detail

Summary

• ID
  rs30676592
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137046420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGAAAATAT CTAATAAAAA TATTTAAAAA GAAAGAAAGA
  AATGTCTTGA AAACCTCTCT GGGCAGTAAT AAGAGGCCAG CTTACTTCCT CAAGAGCAGA
  R
  CGTGATCCAG TTCATACTTG TATTTGCCTC TAGAAGGTGG TCTTCACTGA CTTGGCTTAT
  GAGTTGAGAA GAGAGAAGAA ATGCAATTCC TTGTGGATT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J
ss45454473	mCV23606878	ABI	CRAMUS_MOUSE	f	SNP	A	A				G
ss46990369	NES10869273	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A		A
ss135939700	ENSMUSSNP4120262	ENSEMBL	ENSEMBL_Sanger	f	SNP		A				G
ss320975390	CHEV_3_137003623	CHEVERUD	SCREENING_POP	f	SNP								A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J
rs30676592					SNP	A	A	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46990369	NES10869273	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137046420 () rs orientation: forward

Symbol	Name	Function Class
Emcn	endomucin	404 bp upstream
Rr585936	regulatory region 585936	128 bp proximal
Tssr31897	transcription start site region 31897	373 bp upstream
Tssr31898	transcription start site region 31898	417 bp upstream
Tssr31899	transcription start site region 31899	444 bp upstream
Tssr31900	transcription start site region 31900	488 bp upstream
Tssr31901	transcription start site region 31901	520 bp upstream
Tssr31902	transcription start site region 31902	553 bp upstream