rs30675427 SNP Detail

Summary

• ID
  rs30675427
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131744420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTT TGAGGAGGAA GTAGTCTCAC
  Y
  TAAGAAGCTA TTTGATACGA CCATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss45482397	mCV23620736	ABI	CRAMUS_MOUSE	f	SNP	C		T		C
ss46972771	NES10887838	PERLEGEN	MM_PANEL2	f	SNP	C	C		T			T	T
ss135907979	ENSMUSSNP971639	ENSEMBL	ENSEMBL_Sanger	f	SNP	C				C
ss320968402	CHEV_3_131701623	CHEVERUD	SCREENING_POP	f	SNP						T			C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs30675427					SNP	C	C	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46972771	NES10887838	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131744420 () rs orientation: forward

Symbol	Name	Function Class
Gm29949	predicted gene, 29949	within coordinates
Gm64577	predicted gene, 64577	within coordinates
Rr585407	regulatory region 585407	568 bp distal