rs30675425 SNP Detail

Summary

• ID
  rs30675425
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131744404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATGGCTTT TATTAATTAT
  CAACTTAGAT TTCAGTTCTC TTCCTTTATC TAATTTTTCT TATCTCCATC TCTTCTCCAG
  AGTGATTCAC CGTATTTTCC TGAGTTTTGT AATTTTCTTA AAATTAGACT AGAACTCAAT
  TTTATACTGT TTATTAAGTC CTGACAATAT TAGAGGGTAA ACTCTTCCTA TGTGTTTGAG
  R
  AGGAAGTAGT CTCACTTAAG AAGCTATTTG ATACGACCAT TAAGCACAAC CATTTAGGAT
  ATAAGAAATT AAATATCATG ACTATAAAAA TAATATAAAA TGTAAGTGTA TATAATTTTA
  AAAATGTATG GATTAGAAAT CTTACTTTGG GTGTTATATA TAATTTCTAC AATTTTGAAG
  TGGTACCTTA TGGGCATTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46972769	NES10887837	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30675425					SNP	G	G	G	G	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46972769	NES10887837	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131744404 () rs orientation: forward

Symbol	Name	Function Class
Gm29949	predicted gene, 29949	within coordinates
Gm64577	predicted gene, 64577	within coordinates
Rr585407	regulatory region 585407	552 bp distal