rs30674161 SNP Detail

Summary

• ID
  rs30674161
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131670178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGCAGCA GCAGCAGCAG
  CAGCAACAAC AACAACAACA ACAACAAACA ACAAAACAAC CTAGGGCATT TATCTTTGTG
  TCTCACGAAA TATATCAACT TACCTCCACT ATTAATGATA AAGTCAGACA AAACCATGCC
  TTCTTGCGAC CTGTGCTTTT AGGTGTGGAC AGCAGGTGAA AGAAAACATT ATCTGCTTCA
  Y
  CCGAAGGCTG TCTCTGGCAT TTCTCAGTGT GTATTAATTA AGCCACTCAG CACCCAAAGG
  AGGCGTGGCT TGTTTACCCA ACATCTCAGA GGTCCTAGCT TGCTCCTCCC ACCCATCTGC
  CAACCCATTA TTGCCTGTCT GTTCCTTTTT CCCATGATAC TTTGCTTCCC TCAGCACTGA
  AAAATTATCC TTGTTTTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46972117	NES10869974	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30674161					SNP	T	T	T	T	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46972117	NES10869974	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131670178 () rs orientation: forward

Symbol	Name	Function Class
Gm29865	predicted gene, 29865	within coordinates
Rr585395	regulatory region 585395	270 bp proximal
Rr585396	regulatory region 585396	1443 bp proximal