rs30672407 SNP Detail

Summary

• ID
  rs30672407
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131741768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATAGCAAG CCTGGAAGCA
  AGCCAAATGC CCATTGGAGG GGCAGTGAAT ACTGATGGCA CAGCCACACA ATAGAATATT
  ATATAGCTGT CGAATGAATA CCTTCCCACC CAGTGCTATG AGTGCAACAT AATAATTACT
  CGTTACGCAG AAAAGTCAGC TTCATTATAC ACACATTGCA AGATAAAAGT TCCACAATAC
  R
  AAAGCAATAA AAATTAAAAC AGTATTCCAA ACATACAAAT ATAGCTAATA AGGCCATATA
  AAAAGGAAAA AAAGACAGAT GAAATAGAAC TTGAGGTTAT CATTATCTTG GGTTAGTGTA
  GTAATGGTAA ATAGGTTATA TTTAGCTCAT GACTTTTATT TGAGTGATGG ATTTTAATGT
  GCTGGTGTGT GTGTGTGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46972739	NES10887896	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30672407					SNP	G	G	G	G	A	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46972739	NES10887896	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131741768 () rs orientation: forward

Symbol	Name	Function Class
Gm29949	predicted gene, 29949	within coordinates
Gm64577	predicted gene, 64577	within coordinates
Rr585407	regulatory region 585407	1663 bp proximal