rs30671397 SNP Detail

Summary

• ID
  rs30671397
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:56407665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTCCAATAC CCTCTCTACT CCCTGCCTCC CTTGTCACCT
  CTACCTCCCT TCTCATGATC CCCTTTCTAG TTTTGTGATC TACAGAAATG CATATGAAAA
  Y
  GCACACATTA TTGTAAATCT AGGTTCTGCA TATGATAGAA AGCATGAAGT ATTTCTTTTT
  CTGAGTCTGG CATATTTTAC TTAACATGGT GATTTCTAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46971618	NES10794248	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	T	C	C	C	C	T
ss135194045	ENSMUSSNP6321460	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30671397					SNP	C	C	C	C	C	C	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46971618	NES10794248	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:56407665 () rs orientation: forward

Symbol	Name	Function Class
Rr577048	regulatory region 577048	496 bp distal