rs30671178 SNP Detail

Summary

• ID
  rs30671178
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8632112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTAATCCT AATAGGTTAT
  TACTATAGGT AACCTTGATT GAATTCTACG TGGGTTGCCC TTATAACCCC TAGCTTATAG
  CGATTTGACA TACTGAGACA AGAGAGAACC TCAAGCCATC ATGATGGAGG TCATATGAGG
  ATACTAGATG GGACAAGACT GATAGAGACA GATTAGTTTA TCTCAGTTCT TGATAGAGTG
  W
  GTAATGAGAT CTTAAAGAAA TCCCCAGTGA AAATATGTCA CACACTTACT TCCCCTTCCT
  CCTAACCTCT TGCAGAGGTC TGAGAGGGTC CCCAGGGAGT AATCACAGAC TTGCAGTTAA
  GAGCTAAGCC AGCCGACTGC TCTTTGAGGA GACCGACCCT CAGATCCTCC AGGTCTCCAC
  TAGGACTAAA ACCAGGTGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45953678	mCV24759391	ABI	CRAMUS_MOUSE	f	SNP		A	T					T
ss51549012	NES14865661	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	T	T		T	T	T	T	A	T	T	A	T
ss132972909	ENSMUSSNP4518626	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30671178					SNP	A	A	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51549012	NES14865661	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8632112 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ica1	islet cell autoantigen 1			Intron
				Noncoding-Transcript-Variant
Rr399563	regulatory region 399563			within coordinates
Rr626420	regulatory region 626420			565 bp distal
Rr626421	regulatory region 626421			within coordinates