rs30668593 SNP Detail

Summary

• ID
  rs30668593
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131592286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATATGTGTG ATGCATGTAT ACACTTAGGC ACACACATAC
  ACCTGCACGC ACACACACAC ACACACACAC ACCAAATAAA TGTAAACATC TTTAAAATTC
  Y
  TTCATTTGGA GATACAAGGA TGGCTCTGTG CTTTAGAGTA TTTACTGCCA TTACAAATGA
  CCCCACATTG AGCGTTCAGG TCTTGGCACC CACATCGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46971387	NES10872404	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T
ss135906000	ENSMUSSNP2373767	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30668593					SNP	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46971387	NES10872404	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131592286 () rs orientation: forward

Symbol	Name	Function Class
Gm65547	predicted gene, 65547	1678 bp downstream
Rr585388	regulatory region 585388	59 bp proximal
Rr585389	regulatory region 585389	136 bp proximal