rs30666939 SNP Detail

Summary

• ID
  rs30666939
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17750307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGAAGACA GTGGTTTTTT
  GTTGTTGTTG TTGTTGTTTT ATTTTGTTTT TTAAAATGGC TTCAATTTTG ATACACTGGC
  TAACATCACA GAACATCGGC ATTGTATCAG TTTTAAACTT AACACAATGA AATTGCTTTG
  GTGCAGAGCA GGCCCGGCAC AGTGGGCTGG GCTAGACAGC ACTTGTAGGC ACACGGAATA
  R
  GTAGGTATTT CAAGGATCAT GATAGCCAAA CTGTCTGAGA ACTGTTTGAA TGTTTGATAT
  AAAGTAACCT AACCTGTCGG TGAGTTTGCA TGGCCCCTGC ACAACATTCT GCTATCACTG
  GTGAGCGAAG GTGAGAGCTA AAGAGTTTCT AGAGATTTGA CCTACTGGCC TGGCTTTGCA
  GTGGGGGAAG GGCTGGGTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45952654	mCV22806967	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					A
ss47815172	NES11712067	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		A	A	A	A	G	G	A	G	A
ss133021983	ENSMUSSNP1087012	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30666939					SNP	G	G	A	A	A	A	A	A	A	A	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47815172	NES11712067	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17750307 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42852	predicted gene 42852			1408 bp upstream
Rr626853	regulatory region 626853			1082 bp distal
Rr626854	regulatory region 626854			within coordinates
Rr626855	regulatory region 626855			665 bp proximal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant
Tssr1786	transcription start site region 1786			1205 bp downstream
Tssr55095	transcription start site region 55095			1286 bp downstream
Tssr55096	transcription start site region 55096			1157 bp downstream
Tssr55097	transcription start site region 55097			1043 bp downstream
Tssr55098	transcription start site region 55098			736 bp downstream