rs30666581 SNP Detail

Summary

• ID
  rs30666581
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131591003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGC TTGGGGAATG ACCAATGCAA
  Y
  AGCTCAGCCT TCTCACCCAA CATCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46971365	NES10872383	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	T	C	T	C	T		C	C	C	C		C
ss135905964	ENSMUSSNP6429680	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss320967932	CHEV_3_131548206	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30666581					SNP	T	T	C	C	C	C	T	C	T	C	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46971365	NES10872383	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131591003 () rs orientation: forward

Symbol	Name	Function Class
Gm65547	predicted gene, 65547	395 bp downstream
Rr585388	regulatory region 585388	1342 bp proximal
Rr585389	regulatory region 585389	1419 bp proximal