rs30666579 SNP Detail

Summary

• ID
  rs30666579
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131590953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCAGTAGC AAAATTATCT
  TTTGAAAGGA GCAACAACAT AATTTTATGG TTGGGAGGGC CACCACAGCA TGAGGAACTG
  TGTTAAGGGC TTTGCAGCTT TAGGAAGGTT GAGAATCACT GGTGTAGCAC TTCCCCGAGA
  CACTTTTCAT CCTTCAGTGA GGGAATGGCA GCAGCCTGCG GTTCTTGCAA GCAGGCACAG
  Y
  TGGTTTGATG CACATGGTAG CAGCTGAGCT TGGGGAATGA CCAATGCAAT AGCTCAGCCT
  TCTCACCCAA CATCTCAACT CTTGAGTCAC TCTCTCAGAC TTGCTGCTAT TTGGACTGGG
  GAGGAATGTG TAATTAAAAT GGCATTGCTT CCTTCCTGAA AATATAAATA GTATTGTATA
  TAATGTCTAT GTGATTCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46971361	NES10872381	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30666579					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46971361	NES10872381	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131590953 () rs orientation: forward

Symbol	Name	Function Class
Gm65547	predicted gene, 65547	345 bp downstream
Rr585388	regulatory region 585388	1392 bp proximal
Rr585389	regulatory region 585389	1469 bp proximal