rs30664357 SNP Detail

Summary

• ID
  rs30664357
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108306710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCACTTAA CTTCAGAGGC CACAGCTTGG GAAGTGTGAT
  TAGAGTTCAG TAGACACAAC AGTGTCTAAC CAGCTTCCGC TACAGTGACC TGGAGTTAAT
  R
  ACTTGCTTAC TGAAAGGCGT TTGTTAGACA TAGGAGTAAG TTTGCGAGCC GTTTTTTTTG
  AGGGTGCCCT TTGATCTTGC CCGTCTTCCC ATTGATTTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45953321	mCV23139567	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		G
ss51817525	NES14771500	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		G	G	A	A	G		A	A	G	A
ss133499647	ENSMUSSNP2743983	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30664357					SNP	A	A	A	A	A	A	A	A	G	G	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51817525	NES14771500	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108306710 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr399811	regulatory region 399811	1751 bp downstream
Rr399812	regulatory region 399812	1139 bp downstream
Rr636076	regulatory region 636076	1785 bp distal
Rr636077	regulatory region 636077	708 bp proximal