rs30664264 SNP Detail

Summary

• ID
  rs30664264
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:57513206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCGGTCT AATAAGGAAG
  ATGAGGAAGC AAGCCAACAA ATAAACAGTA AAAGACAAAT CACGTCTAAA GAGGGAACGG
  CTCAGGTGTG GCTGGAGAAC ACTGGGCAGC GGATTTTACC GCGCTGAATC TAGTCAAGGC
  AGGATGGATC TGAGCAGAAG ACAATAGCAG ATGCCTTTCA GGCTGTATCA GCACACTCCC
  K
  GGCAGGTTTC ATGCACAGGA ATACTGGTCA ACACTAAATT GACTCCATGA TTTTTTATGT
  GTGCGTGTTT TGGTTTTGTT TTGATACTTT TTAAGTCTTT TTAAAAATAT TCATTTATTT
  ATTTATTTAT ACACTGTACA CTATAGCGGT CTTCAGACAC TCCAGAAAAT GGCATCAGAT
  TTCATTACGG ATGGTTGTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45952817	mCV25134584	ABI	CRAMUS_MOUSE	f	SNP	G	T	G				G		G
ss51315099	NES13763453	PERLEGEN	MM_PANEL2	f	SNP	T			G	G	G		G	G	T	T	T	T	G
ss133241387	ENSMUSSNP2783084	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30664264					SNP	?	T	G	G	G	G	G	G	G	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51315099	NES13763453	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57513206 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17483	CpG island 17483	961 bp distal
Cpgi17484	CpG island 17484	354 bp distal
Gm45193	predicted gene 45193	within coordinates
Ppm1k	protein phosphatase 1K (PP2C domain containing)	753 bp upstream
Rr399669	regulatory region 399669	503 bp downstream
Rr631141	regulatory region 631141	806 bp distal
Rr631142	regulatory region 631142	305 bp distal
Tssr61156	transcription start site region 61156	826 bp upstream
Tssr61157	transcription start site region 61157	800 bp upstream
Tssr61158	transcription start site region 61158	774 bp upstream
Tssr61159	transcription start site region 61159	724 bp upstream
Tssr61160	transcription start site region 61160	708 bp upstream