rs30664238 SNP Detail

Summary

• ID
  rs30664238
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118455673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAC CCCACCCCCA ATCTGTTTTA
  Y
  TTCTATTCCC TTAGAGGGTG AGTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45952131	mCV24802898	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss133583025	ENSMUSSNP5727774	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321924616	CHEV_6_118428730	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30664238					SNP	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118455673 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17903	CpG island 17903	252 bp proximal
Rr637483	regulatory region 637483	391 bp distal
Rr637484	regulatory region 637484	within coordinates
Rr637485	regulatory region 637485	598 bp proximal
Rr637486	regulatory region 637486	1797 bp proximal
Rr637487	regulatory region 637487	1958 bp proximal
Tssr62662	transcription start site region 62662	525 bp downstream
Zfp9	zinc finger protein 9	Intron