rs30662228 SNP Detail

Summary

• ID
  rs30662228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104846514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAG TCAAGGAGCA TTGAAATACA
  Y
  ATGCTCAGCA TGCACTGGAG CCAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45453281	mCV27551465	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss135572336	ENSMUSSNP4785738	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30662228					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104846514 () rs orientation: forward

Symbol	Name	Function Class
Gm65748	predicted gene, 65748	1618 bp upstream
Rr375523	regulatory region 375523	1850 bp downstream
Rr582630	regulatory region 582630	984 bp distal
Rr582631	regulatory region 582631	379 bp distal
Rr582632	regulatory region 582632	1487 bp proximal
Rr582633	regulatory region 582633	1629 bp proximal