rs30661671 SNP Detail

Summary

• ID
  rs30661671
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15397362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTGAAAT TGAAATTTTT
  AATAAAAATT TCATATAATA TTTGAATAAG CATACAATTT CTCTAAATGA AATAAAATAG
  ACATAGGTTG TAGGTATCTC TAAAGGGGCA GATTCTGTAT ATTTACTTCC AGTAATGGCA
  TTTAATATCC AGGATCAAAA ATGAAGATCA GTGATGTCGG ACATTTGATG CTACAGTCAC
  R
  TTTTGCTCAC ATTGTTACCT TTGCCATCTA TGGTGATGTA TTTGGAAAGT AGATTTTATA
  ATTTCTGCAG TATGAAATTA AATCCTGTGC ATCCCTACAA TATTTTAGTT TCAAGGCTCT
  TTGAGGGGTT CCCCTGCAGA TGAGAACATT CCCTTTTCAT GGACAATTTT CTGCTCACAG
  TTATTGGTAC AGGGAAGATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45950771	mCV23982008	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					A		A
ss60866325	NES15981643	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		A	A	A	G		A	A	A	A		A
ss133005958	ENSMUSSNP6557430	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
ss321751773	CHEV_6_15347363	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30661671					SNP	G	G	A	A	A	A	A	A	A	A	A	G	G	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60866325	NES15981643	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15397362 () rs orientation: forward

Symbol	Name	Function Class
Foxp2	forkhead box P2	Intron
Rr626663	regulatory region 626663	125 bp proximal