rs30661444 SNP Detail

Summary

• ID
  rs30661444
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65301549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCC ATCAACATCC AGTTCACCTC
  R
  GGGACAACTG GAAACCCCAA GGGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45453565	mCV24254060	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30661444					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65301549 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13227	CpG island 13227	1202 bp distal
Cpgi13228	CpG island 13228	654 bp distal
Cpgi13229	CpG island 13229	672 bp proximal
Gm5540	predicted pseudogene 5540	within coordinates
Rr397698	regulatory region 397698	1309 bp downstream
Rr577676	regulatory region 577676	1649 bp distal
Rr577677	regulatory region 577677	1015 bp distal
Ssr3	signal sequence receptor, gamma	1575 bp upstream
Tssr33464	transcription start site region 33464	1566 bp upstream
Tssr33465	transcription start site region 33465	1533 bp upstream