rs30660525 SNP Detail

Summary

• ID
  rs30660525
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30067932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA CTAACACACA TTTCCAGTTT
  Y
  CAGTTAAGCA TATTTTAAAA TAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45453996	mCV22689457	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30660525					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30067932 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13032	CpG island 13032	1190 bp distal
D3Mit46	DNA segment, Chr 3, Massachusetts Institute of Technology 46	179 bp distal
D3Mit46.1	DNA segment, Chr 3, Massachusetts Institute of Technology 46.1	58 bp distal
D3Mit46.3	DNA segment, Chr 3, Massachusetts Institute of Technology 46.3	308 bp distal
Mecom	MDS1 and EVI1 complex locus	Intron
Rr574701	regulatory region 574701	1394 bp distal
Rr574702	regulatory region 574702	638 bp distal
Rr574703	regulatory region 574703	42 bp distal
Rr574704	regulatory region 574704	1380 bp proximal
Rr574705	regulatory region 574705	1645 bp proximal
Tssr28678	transcription start site region 28678	1574 bp downstream
Tssr32873	transcription start site region 32873	872 bp upstream
Tssr32874	transcription start site region 32874	763 bp upstream
Tssr32875	transcription start site region 32875	747 bp upstream
Tssr32876	transcription start site region 32876	634 bp upstream
Tssr32877	transcription start site region 32877	609 bp upstream
Tssr32878	transcription start site region 32878	537 bp upstream
Tssr32879	transcription start site region 32879	523 bp upstream
Tssr32880	transcription start site region 32880	443 bp upstream
Tssr32881	transcription start site region 32881	414 bp upstream
Tssr32882	transcription start site region 32882	384 bp upstream
Tssr32883	transcription start site region 32883	604 bp downstream