rs30659246 SNP Detail

Summary

• ID
  rs30659246
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89261824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACCTGTGA GGAGGCTTCA
  TTCTGGGAGT TTCTCACTCC CCAGCCTGAG TCCTCTGAGC CCACTGCCAC AGGAATAGAA
  GGGACGAGGA AGTTCTGCTA AGCCCCGGCA GCATGCATTC CTCTGGACTT GATGGCAGGA
  GAAGGCCACC TGTGCCACAA GGGTGAGAGC AGATGCTTCT CTGTAAGAAA ATCACCTTCT
  R
  TAACAACAAA GGAAGGAAAA TTAGTCCTGT GCAGAGAAAG AAAGAATTCA GTCCCCATGC
  AGGCCGTTCT CGTTCCTCTC CTGGTGTGGC ATCTCCATTG TCATTGATAT CTTCATGGCA
  GCTCTTCTTC AGGCCTGTCA AATGGAACTC TTTTTGCTAG TAGAACATCT AGTTCTTCTG
  AAATCCAGTC CCTTGCTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	MOLF/EiJ	MSM/Ms	PWD/PhJ	WSB/EiJ
ss45951718	mCV23956195	ABI	CRAMUS_MOUSE	f	SNP	G	A				G
ss47999665	NES11910711	PERLEGEN	MM_PANEL2	f	SNP		A	G	G	A		G	A		A	A
ss133371428	ENSMUSSNP3529345	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A							A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	MOLF/EiJ	MSM/Ms	PWD/PhJ	WSB/EiJ
rs30659246					SNP	G	A	G	G	A	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47999665	NES11910711	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89261824 () rs orientation: forward

Symbol	Name	Function Class
4930512J16Rik	RIKEN cDNA 4930512J16 gene	within coordinates
Rr379731	regulatory region 379731	110 bp upstream
Rr634091	regulatory region 634091	1571 bp distal
Rr634092	regulatory region 634092	353 bp proximal
Rr634093	regulatory region 634093	1269 bp proximal
Rr634094	regulatory region 634094	1495 bp proximal
Rr634095	regulatory region 634095	1981 bp proximal