rs30658909 SNP Detail

Summary

• ID
  rs30658909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:133962368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAGAGAAGA GCTAAGGTCA GATGAGGAGA AAGAATTAAG
  CCCTGAAATT GTCTGCTTCC AGAGAGATAT CATGGGAACC CCTGAGGGAC ACTGGCGAGA
  R
  TAAACTCCAA AATAAAAACG GATCTGGAAA AAAGAGAGAG ATTTTTTTTC TTAAGATTTT
  TTTTATCTTG GTGTGAAAAA AAGAAAAATA GAAGGCTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45950347	mCV24005248	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		G
ss48100273	NES11855115	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		G	G	A	A		G	A	G		A
ss133768819	ENSMUSSNP3330037	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
ss321975818	CHEV_6_133935423	CHEVERUD	SCREENING_POP	f	SNP													G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30658909					SNP	A	A	G	G	G	A	G	A	G	G	A	A	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48100273	NES11855115	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:133962368 () rs orientation: forward

Symbol	Name	Function Class
D6Mit290	DNA segment, Chr 6, Massachusetts Institute of Technology 290	1059 bp proximal
Rr380154	regulatory region 380154	1235 bp upstream
Rr639549	regulatory region 639549	49 bp distal